Ministry Payroll Services
Remove the stress of payroll and navigate the intricacies of clergy and staff compensation with confidence. We provide nationwide ministry payroll services for churches, ministries, and nonprofits — ensuring your organization stays compliant while maximizing the benefits available to your team.
Our Expertise in Ministry Compensation
Church payroll isn't like regular payroll. We specialize in the compliance areas that matter most to ministries.
Clergy Housing Allowances
Proper setup, documentation, and processing to maximize tax benefits legally for pastors and ordained ministers across the country.
SECA vs. FICA
Navigating the complex dual-tax status of ordained ministers — a critical compliance area unique to church and ministry payroll.
W-2 vs. 1099 Classifications
Ensuring your staff, contractors, and guest speakers are classified and reported accurately, whether you're a church, nonprofit, or parachurch organization.
Nonprofit & 501(c)(3) Payroll Compliance
Managing payroll tax obligations, exemptions, and reporting requirements specific to tax-exempt organizations nationwide.
What's Included
Every payroll package covers the essentials your church or nonprofit needs to stay compliant and pay your team accurately.
Payroll Processing
Regular payroll runs with direct deposit for all employees — on your schedule.
Housing Allowance Setup
Clergy housing allowance configuration, board resolution assistance, and annual reminders.
Quarterly 941 Filings
Federal tax filings prepared and submitted on time, every quarter — no reminders needed.
Year-End W-2s & 1099s
All year-end forms generated, distributed, and filed accurately for employees and contractors.
SECA Compliance
Proper handling of the dual-tax status unique to ordained ministers and clergy compensation.
Multi-State Support
Payroll processing for remote and multi-state ministry staff across all 50 states.
The ChurchBiz Guarantee
When you partner with ChurchBiz, here's what you can count on.
Timely Financials
Financial statements delivered by the 7th business day of each month, every month.
24-Hour Response
Your dedicated Client Service Representative responds within 24 business hours — every time.
Dedicated CSR
You're assigned a dedicated Client Service Representative trained and supported by our team of CPAs.
Continuity of Service
We securely store all your financials and data, so your ministry never loses a step — regardless of staff changes.
Frequently Asked Questions
How do you process pastoral housing allowances?
We configure your payroll system so that the designated housing allowance is exempt from federal income tax withholding, while ensuring it is tracked correctly for the pastor's SECA tax obligations. This is one of the most valuable tax benefits available to churches and ministries, and we make sure it's done right. We also send annual reminders to help your leadership stay ahead of IRS deadlines, and we assist in creating and storing the board motion (governing body resolution) required to designate the housing allowance — keeping your church fully documented and audit-ready.
Do you manage quarterly 941 filings and year-end W-2s/1099s?
Absolutely. We take care of all federal, state, and local tax filings for your church or nonprofit, including quarterly 941s, and we generate and distribute all necessary W-2s and 1099s at year-end — keeping your organization audit-ready.
Do you work with nonprofits and organizations without clergy?
Absolutely. We serve the full spectrum of mission-driven organizations across the United States — from local churches and multi-site ministries to 501(c)(3) nonprofits and parachurch organizations. Whether or not you have ordained staff, we ensure your payroll is accurate, compliant, and hassle-free.
Can I add bookkeeping services to my payroll package?
Yes — our bookkeeping & payroll service starts at $300/month and includes everything in the payroll package plus full bookkeeping: monthly reconciliations, giving tracking, budget reports, expense management, QuickBooks maintenance, and client portal access. Most of our clients choose this combined service for complete financial coverage.
Comprehensive Ministry Payroll
Trusted by churches, ministries, and nonprofits nationwide. Get expert compliance, accurate filings, and peace of mind without breaking the budget.
Get Started Today →No commitment required — we'll walk you through everything on a discovery call first.
Ready to Simplify Your
Ministry Payroll?
Whether you're a church plant with your first hire or an established ministry with multi-state staff, we'd love to hear from you. Our team will respond within 1–2 business days.
Contact Our Team →